Transcript: LINC01315:6

Basic information

LNCipedia transcript ID: LINC01315:6 
LNCipedia gene ID: LINC01315
RefSeq ID: NR_120597
Location (hg38): chr22:42364400-42369208
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120597; NR_120597.1
Alternative gene names: lnc-C22orf32-1; LINC01315


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.6399 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01315:6 no no no no

Available literature

  1. Nie (2017), lncRNA C22orf32-1 contributes to the tumorigenesis of nasopharyngeal carcinoma., Oncol Lett
  2. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.
  3. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NFAM1-2:6
4.0 LINC01315:6
4.1 LINC01315:6
5.0 LINC01315:6
5.1 LINC01315:6
5.2 LINC01315:6