Transcript: LINC01315:2

Basic information

LNCipedia transcript ID: LINC01315:2 
HGNC Gene Symbol: LINC01315    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1315
Ensembl Gene ID: ENSG00000229891
Ensembl Transcript ID: ENST00000424852
Location (hg38): chr22:42364525-42369236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1142 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424852; ENST00000424852.1; Z83851.1-001; OTTHUMT00000319654.1; NONHSAT087049
Alternative gene names: ENSG00000229891; Z83851.1; ENSG00000229891.1; OTTHUMG00000150696.1; LINC01315; lnc-C22orf32-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.6399 non-coding 
CPAT coding probability 38.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01315:2 no no no no

Available literature

  1. Nie (2017), lncRNA C22orf32-1 contributes to the tumorigenesis of nasopharyngeal carcinoma., Oncol Lett
  2. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.
  3. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NFAM1-2:1
3.1 lnc-NFAM1-2:1
4.0 LINC01315:2
4.1 LINC01315:2
5.0 LINC01315:2
5.1 LINC01315:2
5.2 LINC01315:2