Transcript: LINC01301:6

Basic information

LNCipedia transcript ID: LINC01301:6 
HGNC Gene Symbol: LINC01301    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1301
Ensembl Gene ID: ENSG00000251396
Ensembl Transcript ID: ENST00000506428
Location (hg38): chr8:60403212-60413818
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2444 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506428; TCONS_00014517; ENST00000506428.1; RP11-163N6.2-001; OTTHUMT00000383450.1
Alternative gene names: ENSG00000251396; XLOC_007093; linc-CA8-6; ENSG00000251396.2; RP11-163N6.2; OTTHUMG00000165326.1; ENSG00000251396.6; LINC01301;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
VNTLGSGR 100% sense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.1962 non-coding 
CPAT coding probability 19.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01301:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA8-2:6
3.1 lnc-CA8-3:6
4.0 LINC01301:6
4.1 LINC01301:6
5.0 LINC01301:6
5.1 LINC01301:6
5.2 LINC01301:6