Transcript: LINC01301:3

Basic information

LNCipedia transcript ID: LINC01301:3 
HGNC Gene Symbol: LINC01301    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1301
Ensembl Gene ID: ENSG00000251396
Ensembl Transcript ID: ENST00000476425
Location (hg38): chr8:60405011-60508759
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000476425; ENST00000476425.2; RP11-163N6.2-005; OTTHUMT00000383452.1; NONHSAT126825
Alternative gene names: ENSG00000251396; ENSG00000251396.2; RP11-163N6.2; OTTHUMG00000165326.1; ENSG00000251396.6; LINC01301;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.9184 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01301:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CA8-2:3
3.1 lnc-CA8-3:3
4.0 LINC01301:3
4.1 LINC01301:3
5.0 LINC01301:3
5.1 LINC01301:3
5.2 LINC01301:3