Transcript: LINC01273:12

Basic information

LNCipedia transcript ID: LINC01273:12 
LNCipedia gene ID: LINC01273
Location (hg38): chr20:50172590-50176559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00027948; ENST00000411453; ENST00000411453.1; RP11-112L6.4-001; OTTHUMT00000079676.1; NONHSAT080282
Alternative gene names: XLOC_013559; linc-CEBPB-1; ENSG00000231742; RP11-112L6.4; ENSG00000231742.1; OTTHUMG00000032718.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4452 non-coding 
CPAT coding probability 4.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01273:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEBPB-1:5
3.1 lnc-CEBPB-1:5
4.0 LINC01273:12
4.1 LINC01273:12
5.0 LINC01273:12
5.1 LINC01273:12
5.2 LINC01273:12