Transcript: LINC01268:2

Basic information

LNCipedia transcript ID: LINC01268:2 
HGNC Gene Symbol: LINC01268    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1268
Ensembl Gene ID: ENSG00000227502
Ensembl Transcript ID: ENST00000434296
Location (hg38): chr6:113868013-113873351
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2755 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434296.2
Alternative gene names: ENSG00000227502.2; RP1-249H1.4; LINC01268; LOC285758


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.017 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01268:2 no no no no

Available literature

  1. Matjasic (2017), Expression of LOC285758, a Potential Long Non-coding Biomarker, is Methylation-dependent and Correlates with Glioma Malignancy Grade., Radiol Oncol
  2. Punzi (2014), Increased expression of MARCKS in post-mortem brain of violent suicide completers is related to transcription of a long, noncoding, antisense RNA., Mol. Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDAC2-1:4
4.0 LINC01268:2
4.1 LINC01268:2
5.0 LINC01268:2
5.1 LINC01268:2
5.2 LINC01268:2