Transcript: LINC01257:3

Basic information

LNCipedia transcript ID: LINC01257:3 
HGNC Gene Symbol: LINC01257    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1257
Ensembl Gene ID: ENSG00000204603
Ensembl Transcript ID: ENST00000376678
RefSeq ID: NR_026670
Location (hg38): chr12:131165011-131212931
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2473 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000376678; ENST00000376678.2; RP11-638F5.1-001; OTTHUMT00000399382.1; NONHSAT032003; NR_026670; ENST00000376678.6; NR_026670.2
Alternative gene names: ENSG00000204603; RP11-638F5.1; ENSG00000204603.2; OTTHUMG00000168350.1; ENSG00000204603.6; LINC01257;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2187 non-coding 
CPAT coding probability 76.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01257:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR133-1:3
3.1 lnc-GPR133-1:3
4.0 LINC01257:3
4.1 LINC01257:3
5.0 LINC01257:3
5.1 LINC01257:3
5.2 LINC01257:3