Transcript: LINC01215:3

Basic information

LNCipedia transcript ID: LINC01215:3 
HGNC Gene Symbol: LINC01215    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1215
Ensembl Gene ID: ENSG00000271856
Ensembl Transcript ID: ENST00000607746
RefSeq ID: NR_110028
Location (hg38): chr3:108125821-108138610
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2592 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110028; ENST00000607746.1; NR_110028.1
Alternative gene names: ENSG00000271856.1; RP11-861A13.4; LINC01215;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.1698 non-coding 
CPAT coding probability 8.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01215:3 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HHLA2-1:4
4.0 LINC01215:3
4.1 LINC01215:3
5.0 LINC01215:3
5.1 LINC01215:3
5.2 LINC01215:3