Transcript: LINC01202:11

Basic information

LNCipedia transcript ID: LINC01202:11 
LNCipedia gene ID: LINC01202
Location (hg38): chr5:161909935-161923706
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 989 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010540; NONHSAT104880
Alternative gene names: XLOC_005067; linc-GABRB2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.2212 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01202:11 no no no no

Available literature

  1. Necsulea (2014), The evolution of lncRNA repertoires and expression patterns in tetrapods., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GABRB2-1:2
3.1 lnc-GABRB2-2:2
4.0 lnc-GABRB2-2:2
4.1 lnc-GABRB2-2:2
5.0 lnc-GABRB2-2:2
5.1 LINC01202:6
5.2 LINC01202:11