Transcript: LINC01194:2

Basic information

LNCipedia transcript ID: LINC01194:2 
HGNC Gene Symbol: LINC01194    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1194
Ensembl Gene ID: ENSG00000248131
Ensembl Transcript ID: ENST00000513051
Location (hg38): chr5:12574857-12759648
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 670 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513051; ENST00000513051.1; RP11-308B16.1-002; OTTHUMT00000366009.1; NONHSAT100512; ENST00000513051.5
Alternative gene names: ENSG00000248131; RP11-308B16.1; ENSG00000248131.1; OTTHUMG00000161760.1; CT49; ENSG00000248131.5; LINC01194; TAG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4644 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01194:2 no no no no

Available literature

  1. Hogan (2004), Identification of novel and widely expressed cancer/testis gene isoforms that elicit spontaneous cytotoxic T-lymphocyte reactivity to melanoma., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIO-3:2
3.1 lnc-TRIO-4:1
4.0 LINC01194:2
4.1 LINC01194:2
5.0 LINC01194:2
5.1 LINC01194:2
5.2 LINC01194:2