Transcript: LINC01176:17

Basic information

LNCipedia transcript ID: LINC01176:17 
HGNC Gene Symbol: LINC01176    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1176
Ensembl Gene ID: ENSG00000281404
Ensembl Transcript ID: ENST00000414621
Location (hg38): chr7:30390908-30412375
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 230 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012988; NONHSAT119868; ENST00000414621.1
Alternative gene names: XLOC_006035; linc-GARS-3; ENSG00000281404.1; LINC01176


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.3166 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01176:17 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GARS-2:4
3.1 lnc-GARS-4:4
4.0 lnc-ZNRF2-4:7
4.1 lnc-ZNRF2-4:7
5.0 lnc-ZNRF2-4:7
5.1 LINC01176:8
5.2 LINC01176:17