Transcript: LINC01173:5

Basic information

LNCipedia transcript ID: LINC01173:5 
HGNC Gene Symbol: LINC01173    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1173
Ensembl Gene ID: ENSG00000280744
Ensembl Transcript ID: ENST00000629370
RefSeq ID: NR_132376
Location (hg38): chr2:234682668-234717764
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000629370.1; NR_132376.1
Alternative gene names: ENSG00000280744.1; LINC01173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -272.3524 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01173:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SH3BP4-3:2
4.1 lnc-SH3BP4-3:2
5.0 lnc-SH3BP4-3:2
5.1 LINC01173:2
5.2 LINC01173:5