Transcript: LINC01162:1

Basic information

LNCipedia transcript ID: LINC01162:1 
LNCipedia gene ID: LINC01162
Location (hg38): chr7:20835431-21022152
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014
Alternative transcript names: ENST00000447262.1; AC006481.1-001; OTTHUMT00000326910.1; NONHSAT119436; NR_126381
Alternative gene names: ENSG00000232790.1; AC006481.1; OTTHUMG00000152589.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.0204 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01162:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCB5-1:1
4.0 LINC01162:1
4.1 LINC01162:1
5.0 LINC01162:1
5.1 LINC01162:1
5.2 LINC01162:1