Transcript: LINC01152:4

Basic information

LNCipedia transcript ID: LINC01152:4 
LNCipedia gene ID: LINC01152
Location (hg38): chr17:72030654-72038265
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000472655; ENST00000472655.2; RP11-84E24.3-003; OTTHUMT00000397674.1
Alternative gene names: ENSG00000256124; RP11-84E24.3; ENSG00000256124.1; OTTHUMG00000168039.1; LINC01152; TCONS_00025128; CMPD


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.4679 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01152:4 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Ninomiya (1996), Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX9-2:3
3.1 lnc-SOX9-2:3
4.0 LINC01152:4
4.1 LINC01152:4
5.0 LINC01152:4
5.1 LINC01152:4
5.2 LINC01152:4