Transcript: LINC01138:7

Basic information

LNCipedia transcript ID: LINC01138:7 
LNCipedia gene ID: LINC01138
Location (hg38): chr1:148432960-148459782
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1074 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT006113
Alternative gene names: FLJ39739


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3846 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:7 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4A-1:8
4.0 LINC01138:7
4.1 LINC01138:7
5.0 LINC01138:7
5.1 LINC01138:7
5.2 LINC01138:7