Transcript: LINC01138:46

Basic information

LNCipedia transcript ID: LINC01138:46 
LNCipedia gene ID: LINC01138
Location (hg38): chr1:148290889-148295859
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 678 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434245; ENST00000434245.1; RP11-495P10.8-001; OTTHUMT00000039533.1; NONHSAT006087
Alternative gene names: ENSG00000231196; RP11-495P10.8; ENSG00000231196.2; OTTHUMG00000014082.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3373 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:46 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF24-2:2
3.1 lnc-NBPF24-4:2
4.0 lnc-NBPF24-4:2
4.1 lnc-NBPF24-4:2
5.0 lnc-NBPF24-4:2
5.1 LINC01138:36
5.2 LINC01138:46