Transcript: LINC01138:40

Basic information

LNCipedia transcript ID: LINC01138:40 
LNCipedia gene ID: LINC01138
Location (hg38): chr1:148295792-148297271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000445201; ENST00000445201.1; RP11-495P10.7-001; OTTHUMT00000039545.1; NONHSAT006092
Alternative gene names: ENSG00000244252; RP11-495P10.7; ENSG00000244252.1; OTTHUMG00000014092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.5054 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:40 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF24-2:1
3.1 lnc-NBPF24-4:1
4.0 lnc-NBPF24-4:1
4.1 lnc-NBPF24-4:1
5.0 lnc-NBPF24-4:1
5.1 LINC01138:30
5.2 LINC01138:40