Transcript: LINC01138:23

Basic information

LNCipedia transcript ID: LINC01138:23 
LNCipedia gene ID: LINC01138
RefSeq ID: NR_027468
Location (hg38): chr1:148432959-148459920
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2052 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027468.3
Alternative gene names: LINC01138


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01138:23 no no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01138:23
5.1 LINC01138:23
5.2 LINC01138:23