Transcript: LINC01138:19

Basic information

LNCipedia transcript ID: LINC01138:19 
HGNC Gene Symbol: LINC01138    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1138
Ensembl Gene ID: ENSG00000274020
Ensembl Transcript ID: ENST00000639181
Location (hg38): chr1:148432956-148519604
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1534 bp
Exons: 7
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000639181.1
Alternative gene names: ENSG00000274020.2; LINC01138


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.1223 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01138:19 yes no no no

Available literature

  1. Wan (2016), Identification of androgen-responsive lncRNAs as diagnostic and prognostic markers for prostate cancer., Oncotarget
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01138:19
5.1 LINC01138:19
5.2 LINC01138:19