Transcript: LINC01133:6

Basic information

LNCipedia transcript ID: LINC01133:6 
HGNC Gene Symbol: LINC01133    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1133
Ensembl Gene ID: ENSG00000224259
Ensembl Transcript ID: ENST00000635112
Location (hg38): chr1:159961299-159984750
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1996 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635112.1
Alternative gene names: ENSG00000224259.6; LINC01133;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -31.1838 non-coding 
CPAT coding probability 6.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01133:6 no no no no

Available literature

  1. Wu (2017), LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis., EMBO Rep.
  2. Zeng (2017), Long Noncoding RNA LINC01133 Sponges miR-422a to Aggravate the Tumorigenesis of Human Osteosarcoma., Oncol. Res.
  3. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  4. Zhang (2015), A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01133:6
4.1 LINC01133:6
5.0 LINC01133:6
5.1 LINC01133:6
5.2 LINC01133:6