Transcript: LINC01133:4

Basic information

LNCipedia transcript ID: LINC01133:4 
HGNC Gene Symbol: LINC01133    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1133
Ensembl Gene ID: ENSG00000224259
Ensembl Transcript ID: ENST00000423943
Location (hg38): chr1:159961224-159979061
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1113 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423943; ENST00000423943.1; RP11-48O20.4-001; OTTHUMT00000060638.1
Alternative gene names: ENSG00000224259; RP11-48O20.4; ENSG00000224259.1; OTTHUMG00000024077.1; LINC01133; ENSG00000224259.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.7701 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01133:4 no no no no

Available literature

  1. Wu (2017), LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis., EMBO Rep.
  2. Zeng (2017), Long Noncoding RNA LINC01133 Sponges miR-422a to Aggravate the Tumorigenesis of Human Osteosarcoma., Oncol. Res.
  3. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  4. Zhang (2015), A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNJ9-1:2
3.1 lnc-KCNJ9-2:2
4.0 LINC01133:4
4.1 LINC01133:4
5.0 LINC01133:4
5.1 LINC01133:4
5.2 LINC01133:4