Transcript: LINC01133:1

Basic information

LNCipedia transcript ID: LINC01133:1 
LNCipedia gene ID: LINC01133
Location (hg38): chr1:159961175-160022889
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4760 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT007031
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.6785 non-coding 
CPAT coding probability 24.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01133:1 yes no no no

Available literature

  1. Wu (2017), LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis., EMBO Rep.
  2. Zeng (2017), Long Noncoding RNA LINC01133 Sponges miR-422a to Aggravate the Tumorigenesis of Human Osteosarcoma., Oncol. Res.
  3. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  4. Zhang (2015), A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNJ9-2:3
4.0 LINC01133:1
4.1 LINC01133:1
5.0 LINC01133:1
5.1 LINC01133:1
5.2 LINC01133:1