Transcript: LINC01122:9

Basic information

LNCipedia transcript ID: LINC01122:9 
HGNC Gene Symbol: LINC01122    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1122
Ensembl Gene ID: ENSG00000233723
Ensembl Transcript ID: ENST00000427421
Location (hg38): chr2:58520753-59061653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2183 bp
Exons: 14
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427421; ENST00000427421.1; AC007092.1-005; OTTHUMT00000327006.1; ENST00000427421.5
Alternative gene names: ENSG00000233723; AC007092.1; ENSG00000233723.2; OTTHUMG00000152613.3; ENSG00000233723.3; LINC01122; ENSG00000233723.7; FLJ30838


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7913 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01122:9 no no no no

Available literature

  1. Hezroni (2015), Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VRK2-5:7
3.1 lnc-VRK2-5:7
4.0 LINC01122:9
4.1 LINC01122:9
5.0 LINC01122:9
5.1 LINC01122:9
5.2 LINC01122:9