Transcript: LINC01117:8

Basic information

LNCipedia transcript ID: LINC01117:8 
LNCipedia gene ID: LINC01117
Location (hg38): chr2:176654334-176655979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004951; NONHSAT075669
Alternative gene names: XLOC_001765; linc-HNRNPA3-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -269.6422 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01117:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTX2-1:4
3.1 lnc-MTX2-1:4
4.0 LINC01117:8
4.1 LINC01117:8
5.0 LINC01117:8
5.1 LINC01117:8
5.2 LINC01117:8