Transcript: LINC01117:5

Basic information

LNCipedia transcript ID: LINC01117:5 
LNCipedia gene ID: LINC01117
Location (hg38): chr2:176638207-176656314
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1602 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT075665; FPKM1_group_17704_transcript_5
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2707 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01117:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTX2-1:7
4.0 LINC01117:5
4.1 LINC01117:5
5.0 LINC01117:5
5.1 LINC01117:5
5.2 LINC01117:5