Transcript: LINC01116:5

Basic information

LNCipedia transcript ID: LINC01116:5 
LNCipedia gene ID: LINC01116
Location (hg38): chr2:176629604-176637595
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 963 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004507; NONHSAT075660
Alternative gene names: XLOC_002408; linc-EVX2-8; ; TALNEC2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
NRNANLPAR 90.9090909090909% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.2797 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01116:5 no no no no

Available literature

  1. Beaver (2017), Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer., J. Nutr. Biochem.
  2. Brodie (2017), The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009336.1-5:3
3.1 lnc-AC009336.1-5:3
4.0 LINC01116:5
4.1 LINC01116:5
5.0 LINC01116:5
5.1 LINC01116:5
5.2 LINC01116:5