Transcript: LINC01115:4

Basic information

LNCipedia transcript ID: LINC01115:4 
HGNC Gene Symbol: LINC01115    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1115
Ensembl Gene ID: ENSG00000237667
Ensembl Transcript ID: ENST00000621134
RefSeq ID: NR_033880
Location (hg38): chr2:779840-868426
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1519 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000621134.4; NR_033880.3
Alternative gene names: ENSG00000237667.5; LINC01115;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.8525 non-coding 
CPAT coding probability 38.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01115:4 no no no no

Available literature

  1. De (2015), Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity., BioData Min


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01115:4
4.1 LINC01115:4
5.0 LINC01115:4
5.1 LINC01115:4
5.2 LINC01115:4