Transcript: LINC01115:3

Basic information

LNCipedia transcript ID: LINC01115:3 
LNCipedia gene ID: LINC01115
RefSeq ID: NR_111963
Location (hg38): chr2:779840-868426
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1282 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_111963; NR_111963.1
Alternative gene names: ; LINC01115


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.2856 non-coding 
CPAT coding probability 38.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01115:3 no no no no

Available literature

  1. De (2015), Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity., BioData Min


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM18-9:5
4.0 LINC01115:3
4.1 LINC01115:3
5.0 LINC01115:3
5.1 LINC01115:3
5.2 LINC01115:3