Transcript: LINC01108:4

Basic information

LNCipedia transcript ID: LINC01108:4 
HGNC Gene Symbol: LINC01108    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1108
Ensembl Gene ID: ENSG00000226673
Ensembl Transcript ID: ENST00000635227
Location (hg38): chr6:14283048-14285454
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 776 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635227.1
Alternative gene names: ENSG00000226673.2; LINC01108; LncRNA-ES1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -82.3892 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01108:4 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene
  2. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  3. Ng (2012), Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01108:4
4.1 LINC01108:4
5.0 LINC01108:4
5.1 LINC01108:4
5.2 LINC01108:4