Transcript: LINC01106:8

Basic information

LNCipedia transcript ID: LINC01106:8 
HGNC Gene Symbol: LINC01106    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1106
Ensembl Gene ID: ENSG00000175772
Ensembl Transcript ID: ENST00000436665
Location (hg38): chr2:110375138-110384442
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2244 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436665; ENST00000436665.2; AC112229.7-003; OTTHUMT00000396318.1
Alternative gene names: ENSG00000175772; AC112229.7; ENSG00000175772.10; OTTHUMG00000155034.3; LINC01106; FLJ38359


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.4554 non-coding 
CPAT coding probability 14.35% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.156848904
covF1Prop0.210526316
seqAAMNMCLVSFFLELNVLQQWPHA

In stringent set: no

Locus conservation

Locus conservation?
LINC01106:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC108938.5.1-1:1
3.1 lnc-AC108938.5.1-2:1
4.0 LINC01106:8
4.1 LINC01106:8
5.0 LINC01106:8
5.1 LINC01106:8
5.2 LINC01106:8