Transcript: LINC01090:5

Basic information

LNCipedia transcript ID: LINC01090:5 
LNCipedia gene ID: LINC01090
Location (hg38): chr2:188226351-188238254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2333 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT076027
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.8745 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01090:5 no no no no

Available literature

  1. Guffanti (2013), Genome-wide association study implicates a novel RNA gene, the lincRNA AC068718.1, as a risk factor for post-traumatic stress disorder in women., Psychoneuroendocrinology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DIRC1-2:3
4.0 LINC01090:5
4.1 LINC01090:5
5.0 LINC01090:5
5.1 LINC01090:5
5.2 LINC01090:5