Transcript: LINC01090:3

Basic information

LNCipedia transcript ID: LINC01090:3 
LNCipedia gene ID: LINC01090
RefSeq ID: NR_126396
Location (hg38): chr2:188035596-188287691
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 496 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126396; NR_126396.1
Alternative gene names: ; LINC01090


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.9259 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01090:3 no no no no

Available literature

  1. Guffanti (2013), Genome-wide association study implicates a novel RNA gene, the lincRNA AC068718.1, as a risk factor for post-traumatic stress disorder in women., Psychoneuroendocrinology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DIRC1-2:4
4.0 LINC01090:3
4.1 LINC01090:3
5.0 LINC01090:3
5.1 LINC01090:3
5.2 LINC01090:3