Transcript: LINC01090:1

Basic information

LNCipedia transcript ID: LINC01090:1 
HGNC Gene Symbol: LINC01090    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1090
Ensembl Gene ID: ENSG00000231689
Ensembl Transcript ID: ENST00000632331
Location (hg38): chr2:188139637-188384313
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000632331.1
Alternative gene names: ENSG00000231689.2; LINC01090;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.8498 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01090:1 yes no no no

Available literature

  1. Guffanti (2013), Genome-wide association study implicates a novel RNA gene, the lincRNA AC068718.1, as a risk factor for post-traumatic stress disorder in women., Psychoneuroendocrinology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01090:1
4.1 LINC01090:1
5.0 LINC01090:1
5.1 LINC01090:1
5.2 LINC01090:1