Transcript: LINC01081:3

Basic information

LNCipedia transcript ID: LINC01081:3 
LNCipedia gene ID: LINC01081
RefSeq ID: NR_104139
Location (hg38): chr16:86225580-86286247
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 736 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104139; NR_104139.1
Alternative gene names: TCONS_00024764; LINC01081


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6262 non-coding 
CPAT coding probability 5.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01081:3 no no no no

Available literature

  1. Szafranski (2014), Two deletions overlapping a distant FOXF1 enhancer unravel the role of lncRNA LINC01081 in etiology of alveolar capillary dysplasia with misalignment of pulmonary veins., Am. J. Med. Genet. A
  2. Szafranski (2013), Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092327.1-2:12
4.0 LINC01081:3
4.1 LINC01081:3
5.0 LINC01081:3
5.1 LINC01081:3
5.2 LINC01081:3