Transcript: LINC01081:14

Basic information

LNCipedia transcript ID: LINC01081:14 
LNCipedia gene ID: LINC01081
Ensembl Gene ID: ENSG00000270058
Ensembl Transcript ID: ENST00000602425
Location (hg38): chr16:86221423-86222729
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000602425.1
Alternative gene names: ENSG00000270058.1; RP11-514D23.3; TCONS_00024764; AC040170.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.0279 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01081:14 no no no no

Available literature

  1. Szafranski (2014), Two deletions overlapping a distant FOXF1 enhancer unravel the role of lncRNA LINC01081 in etiology of alveolar capillary dysplasia with misalignment of pulmonary veins., Am. J. Med. Genet. A
  2. Szafranski (2013), Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092327.1-2:14
4.0 LINC01081:14
4.1 LINC01081:14
5.0 LINC01081:14
5.1 LINC01081:14
5.2 LINC01081:14