Transcript: LINC01060:6

Basic information

LNCipedia transcript ID: LINC01060:6 
LNCipedia gene ID: LINC01060
RefSeq ID: NR_033869
Location (hg38): chr4:188455578-188601908
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT099745; NR_033869; NR_033869.1
Alternative gene names: ; LINC01060


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -248.8106 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01060:6 no no no no

Available literature

  1. Shi (2018), Loss of Linc01060 induces pancreatic cancer progression through vinculin-mediated focal adhesion turnover., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIML1-3:12
4.0 LINC01060:6
4.1 LINC01060:6
5.0 LINC01060:6
5.1 LINC01060:6
5.2 LINC01060:6