Transcript: LINC01056:1

Basic information

LNCipedia transcript ID: LINC01056:1 
HGNC Gene Symbol: LINC01056    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1056
Ensembl Gene ID: ENSG00000237119
Ensembl Transcript ID: ENST00000455711
RefSeq ID: NR_033369
Location (hg38): chr20:63038011-63053863
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1234 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027838; ENST00000455711; ENST00000455711.1; RP11-305P22.5-001; OTTHUMT00000080109.1; NONHSAT080824; NR_033369; NR_033369.1
Alternative gene names: XLOC_013606; linc-BIRC7-5; ENSG00000237119; RP11-305P22.5; ENSG00000237119.1; OTTHUMG00000032954.1; LINC01056;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4166 non-coding 
CPAT coding probability 10.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01056:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC17A9-3:1
3.1 lnc-SLC17A9-3:1
4.0 LINC01056:1
4.1 LINC01056:1
5.0 LINC01056:1
5.1 LINC01056:1
5.2 LINC01056:1