Transcript: LINC01049:1

Basic information

LNCipedia transcript ID: LINC01049:1 
HGNC Gene Symbol: LINC01049    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1049
Ensembl Gene ID: ENSG00000234384
Ensembl Transcript ID: ENST00000426840
Location (hg38): chr13:90493287-90535080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426840; ENST00000426840.1; RP11-158A8.1-001; OTTHUMT00000045436.1
Alternative gene names: ENSG00000234384; RP11-158A8.1; ENSG00000234384.1; OTTHUMG00000017184.1; LINC01049;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.5317 non-coding 
CPAT coding probability 4.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01049:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPC5-9:1
3.1 lnc-GPC5-3:1
4.0 LINC01049:1
4.1 LINC01049:1
5.0 LINC01049:1
5.1 LINC01049:1
5.2 LINC01049:1