Transcript: LINC01044:1

Basic information

LNCipedia transcript ID: LINC01044:1 
HGNC Gene Symbol: LINC01044    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1044
Ensembl Gene ID: ENSG00000223626
Ensembl Transcript ID: ENST00000413637
RefSeq ID: NR_126345
Location (hg38): chr13:112322567-112331225
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021699; ENST00000413637; ENST00000413637.1; RP11-315H15.1-001; OTTHUMT00000045824.1; NONHSAT035275; NR_126345; NR_126345.1
Alternative gene names: XLOC_010733; linc-ANKRD10-9; ENSG00000223626; RP11-315H15.1; ENSG00000223626.1; OTTHUMG00000017366.1; LINC01044;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.0158 non-coding 
CPAT coding probability 11.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01044:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBGCP3-2:1
3.1 lnc-TUBGCP3-2:1
4.0 LINC01044:1
4.1 LINC01044:1
5.0 LINC01044:1
5.1 LINC01044:1
5.2 LINC01044:1