Transcript: LINC01038:3

Basic information

LNCipedia transcript ID: LINC01038:3 
HGNC Gene Symbol: LINC01038    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1038
Ensembl Gene ID: ENSG00000229011
Ensembl Transcript ID: ENST00000457858
Location (hg38): chr13:79804418-79805685
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021576; ENST00000457858; ENST00000457858.1; RP11-276G3.1-001; OTTHUMT00000045383.1; NONHSAT034498
Alternative gene names: XLOC_010449; linc-SLITRK5-13; ENSG00000229011; RP11-276G3.1; ENSG00000229011.1; OTTHUMG00000017137.1; LINC01038;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.4558 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01038:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-5:1
3.1 lnc-NDFIP2-5:1
4.0 LINC01038:3
4.1 LINC01038:3
5.0 LINC01038:3
5.1 LINC01038:3
5.2 LINC01038:3