Transcript: LINC01020:8

Basic information

LNCipedia transcript ID: LINC01020:8 
LNCipedia gene ID: LINC01020
Location (hg38): chr5:5038521-5069994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1565 bp
Exons: 7
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009336; NONHSAT100157
Alternative gene names: XLOC_004269; linc-ADAMTS16-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.2042 non-coding 
CPAT coding probability 44.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01020:8 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS16-1:6
3.1 lnc-ADAMTS16-1:6
4.0 LINC01020:8
4.1 LINC01020:8
5.0 LINC01020:8
5.1 LINC01020:8
5.2 LINC01020:8