Transcript: LINC01020:7

Basic information

LNCipedia transcript ID: LINC01020:7 
HGNC Gene Symbol: LINC01020    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1020
Ensembl Gene ID: ENSG00000215231
Ensembl Transcript ID: ENST00000509382
Location (hg38): chr5:5034463-5059681
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 589 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509382; ENST00000509382.1; CTD-2247C11.3-002; OTTHUMT00000365596.1; ENST00000509382.5
Alternative gene names: ENSG00000215231; CTD-2247C11.3; ENSG00000215231.3; OTTHUMG00000161653.2; LINC01020; ENSG00000215231.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.2042 non-coding 
CPAT coding probability 46.05% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01020:7 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS16-1:5
3.1 lnc-ADAMTS16-1:5
4.0 LINC01020:7
4.1 LINC01020:7
5.0 LINC01020:7
5.1 LINC01020:7
5.2 LINC01020:7