Transcript: LINC01020:5

Basic information

LNCipedia transcript ID: LINC01020:5 
LNCipedia gene ID: LINC01020
Location (hg38): chr5:5034359-5070002
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1749 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT100155; NR_026994
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5146 non-coding 
CPAT coding probability 44.48% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01020:5 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS16-1:11
4.0 LINC01020:5
4.1 LINC01020:5
5.0 LINC01020:5
5.1 LINC01020:5
5.2 LINC01020:5