Transcript: LINC01017:1

Basic information

LNCipedia transcript ID: LINC01017:1 
HGNC Gene Symbol: LINC01017    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1017
Ensembl Gene ID: ENSG00000250716
Ensembl Transcript ID: ENST00000508823
Location (hg38): chr5:3496229-3504004
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 768 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009584; ENST00000508823; ENST00000508823.1; RP11-121L11.2-001; OTTHUMT00000365547.1; NONHSAT100129
Alternative gene names: XLOC_004713; linc-IRX2-11; ENSG00000250716; RP11-121L11.2; ENSG00000250716.1; OTTHUMG00000161633.1; LINC01017;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.5223 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01017:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX2-3:1
3.1 lnc-IRX2-4:1
4.0 LINC01017:1
4.1 LINC01017:1
5.0 LINC01017:1
5.1 LINC01017:1
5.2 LINC01017:1