Transcript: LINC01006:9

Basic information

LNCipedia transcript ID: LINC01006:9 
HGNC Gene Symbol: LINC01006    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1006
Ensembl Gene ID: ENSG00000182648
Ensembl Transcript ID: ENST00000440711
Location (hg38): chr7:156605132-156605744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 336 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417810; ENST00000440711.1; AC073871.2-003; OTTHUMT00000322643.1; ENST00000417810.1; RP5-982E9.1-002; OTTHUMT00000347786.1; NONHSAT124424
Alternative gene names: ENSG00000241558; RP5-982E9.1; ENSG00000182648.7; AC073871.2; OTTHUMG00000141315.3; ENSG00000241558.1; OTTHUMG00000157178.1; LINC01006; ENSG00000182648.11; MY040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.1121 non-coding 
CPAT coding probability 13.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01006:9 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf13-1:2
3.1 lnc-LMBR1-2:6
4.0 LINC01006:9
4.1 LINC01006:9
5.0 LINC01006:9
5.1 LINC01006:9
5.2 LINC01006:9