Transcript: LINC01006:16

Basic information

LNCipedia transcript ID: LINC01006:16 
LNCipedia gene ID: LINC01006
Location (hg38): chr7:156603618-156640562
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 621 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000182648.7|ENST00000418309.1
Alternative gene names: MY040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -37.5155 non-coding 
CPAT coding probability 9.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01006:16 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01006:16
5.0 LINC01006:16
5.1 LINC01006:16
5.2 LINC01006:16