Transcript: LINC01006:1

Basic information

LNCipedia transcript ID: LINC01006:1 
LNCipedia gene ID: LINC01006
RefSeq ID: NR_026865
Location (hg38): chr7:156638366-156640654
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2289 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026865; NR_026865.1
Alternative gene names: MY040; C7orf13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.7152 non-coding 
CPAT coding probability 94.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01006:1 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMBR1-2:9
4.0 LINC01006:1
4.1 LINC01006:1
5.0 LINC01006:1
5.1 LINC01006:1
5.2 LINC01006:1