Transcript: LINC01001:8

Basic information

LNCipedia transcript ID: LINC01001:8 
LNCipedia gene ID: LINC01001
Location (hg38): chr11:129916-131374
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1170 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000542435; ENST00000542435.1; RP11-304M2.2-205; NONHSAT017188
Alternative gene names: ENSG00000230724; RP11-304M2.2; ENSG00000230724.3; OTTHUMG00000165114.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.6867 coding 
CPAT coding probability 72.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01001:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BET1L-1:4
3.1 lnc-BET1L-1:4
4.0 LINC01001:8
4.1 LINC01001:8
5.0 LINC01001:8
5.1 LINC01001:8
5.2 LINC01001:8