Transcript: LINC01001:12

Basic information

LNCipedia transcript ID: LINC01001:12 
LNCipedia gene ID: LINC01001
Location (hg38): chr11:127115-131056
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2661 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000540375; ENST00000540375.1; RP11-304M2.2-204; NONHSAT017183
Alternative gene names: ENSG00000230724; RP11-304M2.2; ENSG00000230724.3; OTTHUMG00000165114.2; ENSG00000230724.5; LINC01001;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 247.399 coding 
CPAT coding probability 95.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01001:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BET1L-1:7
3.1 lnc-BET1L-1:7
4.0 LINC01001:12
4.1 LINC01001:12
5.0 LINC01001:12
5.1 LINC01001:12
5.2 LINC01001:12