Transcript: LINC00973:1

Basic information

LNCipedia transcript ID: LINC00973:1 
LNCipedia gene ID: LINC00973
Location (hg38): chr3:98981057-98984454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2526 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT090834; FPKM1_group_21575_transcript_1
Alternative gene names: CTD-2021J15.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.6156 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00973:1 no no no no

Available literature

  1. Zinovieva (2018), Expression of long non-coding RNA LINC00973 is consistently increased upon treatment of colon cancer cells with different chemotherapeutic drugs., Biochimie
  2. Diao (2017), Risk score based on ten lncRNA-mRNA expression predicts the survival of stage II-III colorectal carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ST3GAL6-2:2
4.0 LINC00973:1
4.1 LINC00973:1
5.0 LINC00973:1
5.1 LINC00973:1
5.2 LINC00973:1